10 min read · April 11, 2024

Top 10 Accounting Software for Shopify Stores | Taxomate Guide

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By Michael Schwartz

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Why do I need to use accounting software with Shopify?

There are many reasons why you might need accounting software with Shopify. Perhaps you need to track inventory levels or manage invoices and payments. Maybe you need to generate reports on your sales and expenses. Whatever the reason, accounting software can make your life a lot easier.

Shopify is one of the best platforms for eCommerce businesses, and it integrates with many different accounting software programs. This makes it easy to find the right solution for your business management. There are many great accounting software options out there, so take some time to research and find the one that best meets your needs. We listed some of the software that business owners can use for accounting systems in the Shopify app store.

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1. Taxomate for Shopify

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  • Platforms: Web
  • Easy of Use: Easy
  • Pricing: Starts at $11.00 / month
  • Free Trial: Yes

taxomate is the best Shopify accounting software for easily posting and reconciling sales invoices to QuickBooks Online, Wave, or Xero accounting software. You can also determine your Cost of Goods Sold and send summarized invoices to your account software.

2. a2x for Shopify Accounting Solution

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  • Platforms: Web
  • Easy of Use: Easy
  • Pricing: Starts at $19.00 / month
  • Free Trial: Yes

Shopify is a platform for businesses of all sizes to create an online store. Shopify offers users a customizable platform, an easy-to-use checkout process, and a wide range of features.

Shopify also has a built-in online accounting solution called a2x. a2x is an automated accounting solution that integrates with Shopify to streamline the accounting process. a2x offers automatic invoicing, bank reconciliation, and financial reporting features.

a2x is similar to taxomate but can be much more expensive.

3. QuickBooks Online for Shopify

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  • Platforms: Web
  • Easy of Use: Easy
  • Pricing: Starts at $20.00 / month
  • Free Trial: Yes

QuickBooks Online for Shopify is an app that allows you to connect your Shopify store to QuickBooks Online, making sales and inventory management easy. The business accounting software automatically syncs your Shopify data with QuickBooks Online, so you can always stay up-to-date on your finances.

4. Xero Shopify Accounting App

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  • Platforms: Web
  • Easy of Use: Easy
  • Pricing: Starts at $12.00
  • Free Trial: Yes

Xero's reporting feature is robust, offering over 65 reports, including the standard balance sheet and P&L. Combined with taxomate for Shopify, this is a very powerful and affordable Shopify accounting tool.

5. Wave for Shopify Store Owners

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  • Platforms: Web
  • Easy of Use: Easy
  • Pricing: Free
  • Free Trial: Yes

Shopify is a platform for businesses of all sizes to create an online store. Wave is accounting software that allows Shopify integration to help store owners manage their finances. Wave offers invoicing, tracking expenses, and creating financial reports for income and expenses. Store owners can use Wave to save time on bookkeeping and accounting to focus on growing their business.

6. Freshbooks for Shopify Businesses

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  • Platforms: Web
  • Easy of Use: Easy
  • Pricing: Starts at $4.50 / month
  • Free Trial: Yes

Freshbooks has several features that make it an excellent accounting software for Shopify users. Freshbooks' built-in tax categories minimize the time needed to prepare and file taxes.

Freshbooks' project tracking feature lets you split expenses for your projects, which could be helpful for large stores. In addition, Freshbooks' project management features help ensure that your online business is actually turning a profit.

7. Sage Business Cloud Accounting for Shopify Sellers

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  • Platforms: Web
  • Easy of Use: Average
  • Pricing: Starts at $10.00 / month
  • Free Trial: Yes

Sage is a great Shopify accounting and bookkeeping tool for sellers. It allows you to manage your inventory, orders, and customers in one place. It also provides powerful reporting and analytics to help you track your business performance.

Sage can help you save time by automatically matching transactions and categorizing them based on your previous choices. It also provides clear, concise invoicing reports and a sleek, user-friendly interface.

8. Zoho Books as Shopify Business Accounting Software

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  • Platforms: Web
  • Easy of Use: Easy
  • Pricing: Starts at $15.00 / month
  • Free Trial: Yes

Zoho Books is a robust and scalable accounting app for Shopify businesses. It's an end-to-end basic accounting platform that will help you from negotiations to invoicing. Zoho Books offers role-based user access so you can collaborate with team members on its integrated platform.

9. Netsuite for Shopify Accounting

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  • Platforms: Web
  • Easy of Use: Difficult
  • Pricing: Starts at $499.00 / month
  • Free Trial: Yes

NetSuite for Shopify Accounting is an app that allows you to manage your Shopify store's finances using NetSuite, a cloud-based accounting software. Netsuite's accounting software is designed to automate and streamline your accounting tasks, giving you real-time insights into your business's financial performance. With Netsuite, you can manage your finances more efficiently and effectively, freeing up time and resources to focus on other aspects of your business.

10. Bot Keeper Accounting App for Shopify

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  • Platforms: Web
  • Easy of Use: Difficult
  • Pricing: Starts at $55.00 / month
  • Free Trial: No

Bot Keeper is an accounting app for Shopify that helps you keep track of your finances and inventory. It's easy to use and helps you stay organized, making it a great choice for small business accounting.

Best Accounting Software for Shopify: Summary

We recommend Xero or QuickBooks along with taxomate integration if you have a small business. If you have a larger business, NetSuite might be a better option and have everything you need to run your Shopify store. If you are just starting an eCommerce journey, give Wave and taxomate a look.

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Michael Schwartz

Michael is the CEO and co-founder of taxomate, one of the leading e-commerce accounting integration software solutions.

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